Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs182546302 | chr12:121365432 | T/A | 0.000314 | 206 | 13.23 | 19.27 | 13.97 | KM Plot |
| KIRP | rs1828292 | chr2:132323092 | C/T | 3.79E-5 | 211 | 18.25 | 13.97 | 13.33 | KM Plot |
| KIRP | rs1828293 | chr2:132323205 | A/G | 3.79E-5 | 211 | 18.25 | 13.97 | 13.33 | KM Plot |
| KIRP | rs1830842 | chr10:26951427 | C/T | 4.66E-5 | 212 | 17.03 | 15.27 | 14.53 | KM Plot |
| KIRP | rs1831241 | chr1:89569062 | A/G | 5.87E-6 | 208 | 9.38 | 19.92 | 14.7 | KM Plot |
| KIRP | rs1840706 | chr10:63363639 | G/T | 0 | 214 | 18.25 | 10.23 | 1.17 | KM Plot |
| KIRP | rs1853681 | chr10:26950371 | C/T | 6.82E-5 | 212 | 17.2 | 14.1 | 15.5 | KM Plot |
| KIRP | rs185569070 | chr11:34783189 | C/G | 0 | 214 | 15.88 | 16.72 | 3.83 | KM Plot |
| KIRP | rs1873625 | chr3:49666964 | C/A | 0.000625 | 213 | 13.52 | 16.97 | 25.33 | KM Plot |
| KIRP | rs1874850 | chr15:24510583 | G/C | 6.5E-5 | 209 | 17.02 | 14.8 | 10.23 | KM Plot |
| KIRP | rs1877718 | chr1:48827792 | A/G | 3.95E-7 | 212 | 14.85 | 19.83 | 11.03 | KM Plot |
| KIRP | rs187959271 | chr17:46115222 | C/A | 1.55E-6 | 206 | 15.88 | 16.68 | 4.92 | KM Plot |
| KIRP | rs188338 | chr1:235677766 | G/A | 0.00047 | 207 | 17.03 | 16.98 | 13.17 | KM Plot |
| KIRP | rs188726810 | chr10:75580226 | A/T | 0 | 214 | 16.5 | 14.95 | 2.47 | KM Plot |
| KIRP | rs188743882 | chr14:59915960 | C/A | 0.000127 | 211 | 16.43 | 16.53 | 6.63 | KM Plot |